CDS

Accession Number TCMCG051C40028
gbkey CDS
Protein Id XP_002321013.1
Location complement(join(9969189..9969314,9969568..9969749,9970485..9970588,9970696..9970761,9972096..9972169,9972338..9972406,9972718..9972850,9972930..9973201,9973352..9974527,9974729..9975052,9975133..9975354))
Gene LOC7457943
GeneID 7457943
Organism Populus trichocarpa

Protein

Length 915aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_002320977.3
Definition DNA mismatch repair protein PMS1 isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category L
Description mismatch repair
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10858        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03430        [VIEW IN KEGG]
ko03460        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map03460        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0002200        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0002377        [VIEW IN EMBL-EBI]
GO:0002440        [VIEW IN EMBL-EBI]
GO:0002520        [VIEW IN EMBL-EBI]
GO:0002566        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003697        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005856        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009555        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0015630        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016445        [VIEW IN EMBL-EBI]
GO:0016446        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032138        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032389        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAATCCTCCGCAATCACTATCAGGCCTATAAACAAAGCCGCTGTCCACAGAATCTGCGCTGGTCAAGTGATTTTGGACCTCTCATCCGCAGTCAAGGAGCTTGTTGAAAACAGCTTGGATGCTGGCGCTACTTCCATCGAAATCTCTTTGAAAGACTACGGCCTGGAATCCTTCCAGGTCATCGATAATGGCTGCGGCGTCTCTCCTAATAATTTCAAGGTTCTGGCACTTAAGCACCACACCTCCAAATTGGGGGACTTTCATGATCTTCAGTCTTTGACCACATTTGGTTTCAGAGGAGAGGCATTGAGTTCGCTTTGCGTGTTAGGAGACCTCACTGTTGAAACAAGGACCAAAAACGAGCCGGTGGCTACACACTTGACTTTTAATCATTCAGGTTTGTTAACAGCCGAGAGAAAGACAGCCCGACAGGTTGGCACGACAGTCACTGTTAAGAAGTTGTTTTCCAGTTTGCCGGTGCGAAGCAAAGAATTTAGCCGCAACATTCGCAAGGAATACGGAAAGCTTATTTCTTTATTGAATGCCTATGCTCTTATTTCAAAAGGCGTTCGCATAGTCTGCTCTAACACAACTGGTAAAAATGCAAAGTCTGTAGTACTAAAAACCCAAGGAAGTGATTCCCTTAAAGATAACATCATAACAGTGTTTGGCGTGAACACCTTCAGCTGCTTAGAACCTGTGGATATAGATATATCAGGCAGTTGCAAGGTTGAAGGCTTCCTTTCTAAGTCTGGTCAAGGCAGTGGTCGCAATTTGGGTGATAGACAATACTATTTTGTAAATGGTCGACCAGTGGACATGCCTAAAGTCAGCAAGCTTGTGAATGAACTATACAAAGGTGCAAACTCCCGACAATATCCCATCGCAATCATGAATTTCACCATTCCAACTACAGCGTGTGATGTTAATGTGACTCCTGACAAAAGAAAAATATTCTTTTCTGATGAGAGCTCTATACTGCTTGCTCTAAGGGAGGGACTGGAAAAAAATTATTCTTCAAGTAATTCCTGTTATTCTGTTAATAAATTTGAGAATCATGCTAAGGCAGCAGATAGCTCTCAGCTGTGCTCTCCTCGCGAGAAATCTAATATGTTATCAAAACAATCATCTGCAAATGGCAATGATAGTGAAGAAACTCAAACAGATGCAGAGGACAGCAGTCCACTCATGACAGTTGAAGTCAAATCTAAGCCCTTTCAAGTTGGAGAAAGATCTATCCATGACATCGAAGAAAAGTTTATGATGAAGGACTTTGCTCTTAGATTACATGGCATTAAGAAAACTGATAGTCTTACAAACAGTAACAGCTGCAAAGCAACGACACATCTCAATATTGTGACGGATCAAAATGCACAATGCCCGTCAAGAGTGGTTGAGCGAGTAAAGGGGGATTCAAATGGTCCTTCAGGCTCCTTTCAATCAAAACTCAGCAATTTTTTAACTGTCAATAAGAGAAAGCGTGAAGACATTACTACACAATTGTCTGAAGTTCCTGTTCTAAGAAATCAGACCTCTGAATGTCAATTGAAGAAAAGTGATATTGACATTCATGATGCGGTTACAAGTCTTCTTTTTAATCATCACCACATTGATGATTCTACTGAGTTTACTGATGCTGAGCCCCCCAAACATCACAGCACAGATGTGATCATCAATAAAACAAGGAATAATTCAGGATTGCAGCCTAAACTTGCGGAGGATCCATCAGGTGAGCAAAATTCATCTTCTCCTGATGATGTCCCATCAATTACTACCCCTTGCAAAGGGCTTGGAAATTTGTTAGAGGATCTTCCTGTTGCCTCTCCTCCAGCTCAATCTTCCATCGAATTATTAGATGCTCCAGTGCCTTTTTCTGCCCAACAGATATGCTCCACCTTGCAATTTAGCTTTCAAGACCTGCATTCAAGAAGGATGCAGAGGCTGTCAAGGTTGCAATCTGGCAAATTCACGTTTGGAGGCTCAAAGAGAAGTCATAGGAGCTATGCTGCTGCTACACTGGAGCTCTCTCAACCAGACAATGAGGAGCGGAAATTAAGGGCTTTAGCTGCTGCTACAACTGAGTTAGAAAGACTATTCAGAAAAGAAGACTTTGGTAGAATGAAGGTGATTGGTCAATTTAATCTTGGTTTTATCATTGGGAAATTAGATCAGGATTTGTTTATCGTGGATCAGCATGCTGCTGATGAGAAGTATAATTTTGAGAGACTCTGTCAATCAACCATTTTAAACCAGCAGCCCTTGCTTCGGCCACTGAGGCTGGAGTTATCTCCAGAAGAGGAAGTAGTTGCTTCAATGAACCTAGACATAATCAGAAAAAATGGATTTGCTTTGGAAGAGGATCCACATGCACTACCTGGGCATCATTTTAAATTGAAAGCTGTTCCCTTTAGTAAGAACATAACTTTTGGAGTTGAAGATGTGAAGGATCTGATTTCTACTCTTGCTGATAGTCAAGGGGAATGCTCCATAATCAGTAGATACAAAATGGACACTGCTGATTCCGTCTGCCCATCAAGAGTTCATGCAATGTTTGCATCACGTGCATGCAGATCATCGGTTATGATTGGAGATGCACTAGGGAGGAATGAAATGCAGAAGATACTTGAGCATTTGGTCGATCTAAAGTCCCCCTGGAATTGCCCCCATGGCAGACCAACCATGCGCCATTTGATTGACATGTCATCCATTTACGAAAGGCCAGATGAAACGGAAGCGGGCTTGTGA
Protein:  
MESSAITIRPINKAAVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGLESFQVIDNGCGVSPNNFKVLALKHHTSKLGDFHDLQSLTTFGFRGEALSSLCVLGDLTVETRTKNEPVATHLTFNHSGLLTAERKTARQVGTTVTVKKLFSSLPVRSKEFSRNIRKEYGKLISLLNAYALISKGVRIVCSNTTGKNAKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDISGSCKVEGFLSKSGQGSGRNLGDRQYYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMNFTIPTTACDVNVTPDKRKIFFSDESSILLALREGLEKNYSSSNSCYSVNKFENHAKAADSSQLCSPREKSNMLSKQSSANGNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEKFMMKDFALRLHGIKKTDSLTNSNSCKATTHLNIVTDQNAQCPSRVVERVKGDSNGPSGSFQSKLSNFLTVNKRKREDITTQLSEVPVLRNQTSECQLKKSDIDIHDAVTSLLFNHHHIDDSTEFTDAEPPKHHSTDVIINKTRNNSGLQPKLAEDPSGEQNSSSPDDVPSITTPCKGLGNLLEDLPVASPPAQSSIELLDAPVPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFTFGGSKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLFRKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRKNGFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTADSVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLIDMSSIYERPDETEAGL